These properties include having a small nuclear genome, a near absence of dispersed repetitive DNA, and a generation time of 4 to 5 weeks. 2000; 408:796–815. Arabidopsis thaliana is the most widely studied model plant. Organism. Ensembl Plants: Arabidopsis thaliana (Thale cress) Arabidopsis thaliana: Gramene: Gramene: Arabidopsis thaliana (Thale cress) Arabidopsis thaliana: URGI: gnpGenome: Arabidopsis thaliana (Thale Cress) Arabidopsis thaliana: VIB Ghent: PLAZA: Arabidopsis thaliana (Thale Cress) Arabidopsis thaliana … a model organism in plant biology. Common name: Mouse-ear cress UniProt identifier: ARATH NCBI Taxonomy ID: 3702 DB Name: Arabidopsis thaliana from Ensembl Plants 38 DB Release: Ensembl Plants 38; TAIR10 The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Protein names i: Recommended name: Filament-like plant protein 6. BLAST/BLAT. UidA plants showed lesser GUS activity as compared to plants treated in abiotic stress conditions. It has been extensively used as a model organism to study genetics and plant physiology. Export data. Ensembl Plants hosts the latest wheat assembly from the IWGSC (RefSeq v1.0), including:. Annotated by 4 databases (ENA, RefSeq, miRBase, Ensembl Plants). AtGDB is being developed as a part of our NSF-funded project "Cyberinfrastructure for (Comparative) Plant Genome Research Through PlantGDB" (PI: Volker Brendel). Keywords Abiotic stress Arabidopsis thaliana Inducible promoter myo-inositol MIOX Wheat Results support that the TaMIOX promoter could be used as a potential candidate for conditional expression of the transgene in abiotic stress conditions. 2003; 164:359–72. Arabidopsis thaliana has recently become the organism of choice for a wide range of studies in plant sciences (1). Alignment of 98,270 high confidence genes from the TGACv1 annotation. Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs. Genetic analysis of diverse PIN functions in Arabidopsis patterning. Inter-Homeologous Variants (IHVs) between the A, B and D genome components. Arabidopsis thaliana Release Notes. Functional genomics is intensively underway in many laboratories worldwide. Involved in the abaxial cell fate determination during embryogenesis and organogenesis. The sequenced regions cover 115.4 megabases of the 125-megabase genome … The development of resources for wheat is funded by the BBSRC-funded Designing Future Wheat ISP. What can I find? The leaves form a rosette at the base of the plant, with a few leaves also on the flowering stem. This pre miRNA sequence is 109 nucleotides long and is found in Arabidopsis thaliana. Gene. Beyond the basic annotation of the primary sequence data, the annotated genetic elements of Arabidopsis must be linked to diverse biological data and higher order information such as metabolic or regulatory pathways. This rRNA sequence is 1,808 nucleotides long and is found in Arabidopsis thaliana. Matches 1 Rfam family (MIR397, RF00704). but its small genome size and ease of cultivation offer important Its genome was the first among plants to be sequenced, becoming the reference in plant genomics. Homologues, gene trees, and whole genome alignments across multiple species. In the model species Arabidopsis thaliana (Arabidopsis hereafter), A-class genes APETALA1 ( AP1 ) and AP2 specify sepals in the first outermost whorl, whereas A-class genes Described in 6 papers. Filter for all genes that are annotated with the GO term ‘pentose- phosphate shunt’, the official GO term for the pentose-phosphate Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Reviewed-Annotation score: -Experimental evidence at protein level i. Arabidopsis thaliana is a dicot plant belonging to the family Brassicaceae. Lukens L, Zou F, Lydiate D, Parkin I, Osborn T. Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana. ELIXIR implementation study FONDUE - FAIR-ification of Plant Genotyping Data and its linking to Phenotyping using ELIXIR Platforms. Pastebin.com is the number one paste tool since 2002. Arabidopsis thaliana (thale-cress) rRNA sequence is a product of AT2G01010, At2g01015 genes. Arabidopsis thaliana (Mouse-ear cress) Status. transPLANT, funded by the European Commission within its 7th Framework Programme, under the thematic area "Infrastructures", contract number 283496. Arabidopsis thaliana is a small flowering plant that is widely used as a model organism in plant biology. Variant Effect Predictor. Possesses cystine lyase activity in vitro. Arabidopsis is a member of the mustard (Brassicaceae) family, which includes cultivated species such as cabbage and radish. Automated summary: This precursor RNA sequence is 107 nucleotides long and is found in Arabidopsis thaliana. Hydroxyproline-rich glycoproteins (HRGPs) are a superfamily of plant cell wall structural proteins that function in various aspects of plant growth and development, including pollen tube growth. Hydroxyproline-rich glycoproteins (HRGPs) are a superfamily of plant cell wall structural proteins that function in various aspects of plant growth and development, including pollen tube growth. 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